STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13025COG2188 Transcriptional regulators. (253 aa)    
Predicted Functional Partners:
RAM_37375
COG2188 Transcriptional regulators.
  
     0.638
RAM_13030
Hypothetical protein.
       0.608
RAM_13020
Basic amino acid/polyamine antiporter; COG0531 Amino acid transporters.
       0.573
NagA
COG1820 N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.528
RAM_01360
COG2186 Transcriptional regulators.
  
    0.525
PhnF
COG1725 Predicted transcriptional regulators.
  
     0.511
RAM_10410
COG2186 Transcriptional regulators.
  
    0.455
RAM_10965
COG2186 Transcriptional regulators.
  
    0.447
AgaS
COG2222 Predicted phosphosugar isomerases.
 
  
 0.432
PdhR-6
COG2186 Transcriptional regulators.
  
    0.424
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.