STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13105Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1046 aa)    
Predicted Functional Partners:
RAM_02510
RND family efflux transporter MFP subunit; COG0845 Membrane-fusion protein.
  
 
 0.840
RAM_43455
Peptidoglycan-binding protein.
  
 
 0.840
RAM_33960
Hypothetical protein.
  
 
 0.765
RAM_33965
Hypothetical protein.
  
 
 0.765
RAM_23045
Two-component system sensor kinase; COG2770 FOG: HAMP domain.
 
 
 
 0.584
RAM_13110
Ribonuclease BN; COG1295 Predicted membrane protein.
     
 0.563
YajC
COG1862 Preprotein translocase subunit YajC.
    
 
 0.530
HypF
COG0068 Hydrogenase maturation factor.
   
  
 0.416
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.