STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13110Ribonuclease BN; COG1295 Predicted membrane protein. (384 aa)    
Predicted Functional Partners:
RAM_07990
Chromosome segregation-related protein.
 
     0.676
RAM_05165
Hypothetical protein.
  
     0.609
RAM_41560
Hypothetical protein.
  
     0.596
RAM_13105
Hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family protein; COG0841 Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
     
 0.565
RAM_05430
Hypothetical protein.
  
    0.545
RAM_43565
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
    0.545
RAM_08795
Cysteine dioxygenase; COG5553 Predicted metal-dependent enzyme of the double-stranded beta helix superfamily.
  
     0.536
RAM_13115
Type III restriction enzyme, res subunit; COG1061 DNA or RNA helicases of superfamily II.
       0.513
RAM_47930
Glycoprotein.
  
     0.494
RAM_00200
Hypothetical protein.
  
     0.489
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.