STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XylFSugar ABC transporter periplasmic protein; COG4213 ABC-type xylose transport system, periplasmic component. (379 aa)    
Predicted Functional Partners:
RAM_13130
ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
 
 0.978
RAM_13125
COG1129 ABC-type sugar transport system, ATPase component.
 
 
 0.976
XylH
COG4214 ABC-type xylose transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 0.793
RAM_13135
COG1940 Transcriptional regulator/sugar kinase.
 
     0.633
XylG
COG1129 ABC-type sugar transport system, ATPase component.
 
  
 0.632
RAM_22410
Inner membrane ABC transporter permease protein YjfF; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
   
 0.623
RAM_22395
COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.618
RAM_22405
Sugar ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 
   
 0.615
RAM_25960
COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.573
RAM_25950
COG1129 ABC-type sugar transport system, ATPase component.
 
  
 0.567
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.