STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13130ABC transporter permease; COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components. (487 aa)    
Predicted Functional Partners:
RAM_13125
COG1129 ABC-type sugar transport system, ATPase component.
 
 0.989
XylF
Sugar ABC transporter periplasmic protein; COG4213 ABC-type xylose transport system, periplasmic component.
 
 
 0.978
RAM_13135
COG1940 Transcriptional regulator/sugar kinase.
 
     0.815
AraG
COG1129 ABC-type sugar transport system, ATPase component.
  
 0.746
RbsA
COG1129 ABC-type sugar transport system, ATPase component.
  
 0.744
rbsA
Sugar ABC transporter ATPase; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
 0.743
RAM_22400
COG1129 ABC-type sugar transport system, ATPase component.
  
 0.735
FrcA
COG1129 ABC-type sugar transport system, ATPase component.
  
 0.730
RAM_25950
COG1129 ABC-type sugar transport system, ATPase component.
  
 0.702
RbsB
COG1879 ABC-type sugar transport system, periplasmic component.
 
  
 0.697
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.