Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RAM_13160COG0531 Amino acid transporters. (479 aa)    
Predicted Functional Partners:
glgE
Alpha amylase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
  
 0.531
RAM_13195
Trehalose synthase; COG0366 Glycosidases.
  
 0.523
MalQ
COG1640 4-alpha-glucanotransferase.
       0.512
MalZ-2
Alpha-glucosidase; COG0366 Glycosidases.
   
 0.436
MalZ-3
Alpha-glucosidase; COG0366 Glycosidases.
   
 0.436
MalZ-4
Alpha-glucosidase; COG0366 Glycosidases.
   
 0.436
RAM_39810
Hypothetical protein.
    
 0.433
RAM_13180
Maltooligosyltrehalose trehalohydrolase; COG0296 1,4-alpha-glucan branching enzyme.
     
 0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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