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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13280COG0531 Amino acid transporters. (678 aa)    
Predicted Functional Partners:
TrkA-2
Trk system potassium uptake protein TrkA; COG0569 K+ transport systems, NAD-binding component.
 
   
 0.890
TrkA
Trk system potassium uptake protein TrkA; COG0569 K+ transport systems, NAD-binding component.
 
   
 0.887
RAM_13285
23S rRNA methyltransferase; COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
     
 0.885
RAM_13260
Hypothetical protein.
 
     0.746
RAM_13290
Hypothetical protein.
       0.664
glgE
Alpha amylase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.514
RAM_13195
Trehalose synthase; COG0366 Glycosidases.
   
 0.514
MalZ-2
Alpha-glucosidase; COG0366 Glycosidases.
   
 0.514
MalZ-3
Alpha-glucosidase; COG0366 Glycosidases.
   
 0.514
MalZ-4
Alpha-glucosidase; COG0366 Glycosidases.
   
 0.514
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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