STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13290Hypothetical protein. (187 aa)    
Predicted Functional Partners:
RAM_13280
COG0531 Amino acid transporters.
       0.664
RAM_13285
23S rRNA methyltransferase; COG2265 SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.664
RAM_09815
Hypothetical protein.
 
     0.547
RAM_33330
Peptidase M48; COG0501 Zn-dependent protease with chaperone function.
  
     0.498
TrkA
Trk system potassium uptake protein TrkA; COG0569 K+ transport systems, NAD-binding component.
       0.478
TrkA-2
Trk system potassium uptake protein TrkA; COG0569 K+ transport systems, NAD-binding component.
       0.478
RAM_08255
COG2360 Leu/Phe-tRNA-protein transferase.
  
     0.470
RAM_33565
Hypothetical protein.
  
     0.465
RAM_34155
COG1997 Ribosomal protein L37AE/L43A.
  
     0.422
RAM_28450
Two-component system response regulator; COG2203 FOG: GAF domain.
  
     0.409
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.