STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13375Hypothetical protein. (209 aa)    
Predicted Functional Partners:
RAM_31185
Hypothetical protein.
  
     0.609
RAM_13380
Hypothetical protein; COG0749 DNA polymerase I - 3'-5' exonuclease and polymerase domains.
       0.596
RAM_34695
COG4331 Predicted membrane protein.
  
     0.533
RAM_47340
COG3255 Putative sterol carrier protein.
  
     0.517
RAM_41210
Hypothetical protein.
  
     0.468
RAM_13365
3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.
       0.453
FadA-2
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
       0.453
RAM_13480
Hypothetical protein.
  
     0.449
RAM_44660
Hypothetical protein; COG3409 Putative peptidoglycan-binding domain-containing protein.
  
     0.446
RAM_42195
Hypothetical protein.
  
     0.430
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (46%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.