STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13390UreA amidolyase; COG0439 Biotin carboxylase. (1116 aa)    
Predicted Functional Partners:
AmiE-3
Allophanate hydrolase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
  
 0.999
RAM_03800
acetyl/propionyl-CoA carboxylase, carboxyltransferase subunit; COG0777 Acetyl-CoA carboxylase beta subunit.
 
 
 0.984
pxpA
LamB-like protein; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
  
  
 0.982
RAM_43045
Hypothetical protein; Belongs to the D-glutamate cyclase family.
  
    0.956
ureC
Urease subunit alpha; COG0804 Urea amidohydrolase (urease) alpha subunit.
    
 0.933
RAM_13400
Hypothetical protein.
 
   
 0.919
RAM_13405
Hypothetical protein.
 
   
 0.919
ureB
Urease beta subunit; COG0832 Urea amidohydrolase (urease) beta subunit; Belongs to the urease beta subunit family.
    
 0.919
RocF
COG0010 Arginase/agmatinase/formimionoglutamate hydrolase, arginase family; Belongs to the arginase family.
  
 
 0.913
ureA
Urease gamma subunit; COG0831 Urea amidohydrolase (urease) gamma subunit; Belongs to the urease gamma subunit family.
    
 0.908
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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