STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13410COG0531 Amino acid transporters. (489 aa)    
Predicted Functional Partners:
RAM_13405
Hypothetical protein.
 
   
 0.853
RAM_13400
Hypothetical protein.
 
   
 0.816
RAM_13395
UreA amidolyase; COG0439 Biotin carboxylase.
       0.763
RAM_35090
COG0531 Amino acid transporters.
  
     0.599
RAM_13415
COG1309 Transcriptional regulator.
 
     0.569
RAM_17395
COG0531 Amino acid transporters.
  
     0.548
RAM_32295
COG1113 Gamma-aminobutyrate permease and related permeases.
 
  
 0.448
glgE
Alpha amylase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
 0.436
RAM_13195
Trehalose synthase; COG0366 Glycosidases.
   
 0.436
MalZ-2
Alpha-glucosidase; COG0366 Glycosidases.
   
 0.436
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.