STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13415COG1309 Transcriptional regulator. (196 aa)    
Predicted Functional Partners:
RAM_13405
Hypothetical protein.
 
     0.858
RAM_13400
Hypothetical protein.
 
     0.808
RAM_13390
UreA amidolyase; COG0439 Biotin carboxylase.
 
 
   0.644
AmiE-3
Allophanate hydrolase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
  
     0.574
RAM_13410
COG0531 Amino acid transporters.
 
     0.570
AmiE-5
Amidase; COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases.
  
     0.567
RAM_13395
UreA amidolyase; COG0439 Biotin carboxylase.
   
   0.487
RAM_44440
alpha-L-fucosidase/alpha-galactosidase.
  
     0.471
RAM_07780
COG3669 Alpha-L-fucosidase.
  
     0.442
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.