STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13455Hypothetical protein. (112 aa)    
Predicted Functional Partners:
RAM_13460
COG3220 Uncharacterized protein conserved in bacteria.
 
     0.951
RAM_13465
Hypothetical protein.
 
     0.946
RAM_13470
Hypothetical protein.
 
     0.906
RAM_12925
Hypothetical protein.
  
     0.626
RAM_22450
Hypothetical protein.
  
     0.605
RAM_22275
Hypothetical protein.
  
     0.604
MsrA
Peptide-methionine (R)-S-oxide reductase; COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase.
  
  
 0.519
RAM_46390
Hypothetical protein; COG1357 Uncharacterized low-complexity proteins.
  
     0.519
RAM_32875
Hypothetical protein.
  
     0.517
RifA
Rifamycin polyketide synthase; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
 
     0.507
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.