STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13460COG3220 Uncharacterized protein conserved in bacteria. (266 aa)    
Predicted Functional Partners:
RAM_13455
Hypothetical protein.
 
     0.949
RAM_13465
Hypothetical protein.
 
     0.939
RAM_13470
Hypothetical protein.
 
     0.883
MsrA
Peptide-methionine (R)-S-oxide reductase; COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase.
  
  
 0.547
RAM_00280
FHA domain-containing protein; COG1716 FOG: FHA domain.
  
    0.516
RAM_16345
COG0474 Cation transport ATPase.
   
    0.501
RAM_27865
COG0474 Cation transport ATPase.
   
    0.501
RAM_37500
Hypothetical protein; COG3451 Type IV secretory pathway, VirB4 components.
   
    0.488
RAM_22275
Hypothetical protein.
  
     0.480
RAM_12925
Hypothetical protein.
  
     0.478
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.