STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MsrAPeptide-methionine (R)-S-oxide reductase; COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase. (145 aa)    
Predicted Functional Partners:
msrA
Methionine sulfoxide reductase A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
 
 0.995
RAM_13480
Hypothetical protein.
       0.832
RAM_11600
Hypothetical protein.
   
 
 0.728
RAM_13485
COG0515 Serine/threonine protein kinase.
       0.627
RAM_00175
Peptidyl-prolyl cis-trans isomerase A (cyclophilin A); PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
 
 
 0.578
RAM_13470
Hypothetical protein.
       0.577
PpiB-4
COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.
 
 
 0.565
PpiB-3
COG0652 Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family.
 
 
 0.564
RAM_13455
Hypothetical protein.
  
  
 0.547
RAM_13460
COG3220 Uncharacterized protein conserved in bacteria.
  
  
 0.547
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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