STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13490Hypothetical protein. (220 aa)    
Predicted Functional Partners:
Lig
ATP-dependent DNA ligase; COG3285 Predicted eukaryotic-type DNA primase.
       0.547
icmF
methylmalonyl-CoA mutase; Catalyzes the reversible interconversion of isobutyryl-CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly.
       0.500
RAM_44485
Hypothetical protein.
       0.493
RAM_13485
COG0515 Serine/threonine protein kinase.
       0.471
MsrA
Peptide-methionine (R)-S-oxide reductase; COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase.
  
    0.469
LepB-3
COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.425
RAM_13480
Hypothetical protein.
       0.421
YidC-2
COG0706 Preprotein translocase subunit YidC.
 
   
 0.419
LepB
COG0681 Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.408
RAM_04065
COG1605 Chorismate mutase.
 
   
 0.402
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.