STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13520Hypothetical protein; COG2508 Regulator of polyketide synthase expression. (517 aa)    
Predicted Functional Partners:
RAM_13515
Hypothetical protein.
       0.723
PutA
COG1012 NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family.
       0.538
PucR-2
PucR family transcriptional regulator; COG2508 Regulator of polyketide synthase expression.
 
     0.537
RAM_26090
Beta-lactamase.
  
     0.496
NrdB-2
COG0208 Ribonucleotide reductase, beta subunit.
  
     0.496
RAM_31415
Hypothetical protein.
  
     0.447
RAM_31420
Hypothetical protein; COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
  
     0.431
RAM_20990
ATPase; COG2251 Predicted nuclease (RecB family).
  
     0.424
RAM_26095
COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.400
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: medium (54%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.