STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13560COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain; Belongs to the sigma-70 factor family. (380 aa)    
Predicted Functional Partners:
RAM_13550
COG3795 Uncharacterized protein conserved in bacteria.
 
     0.936
RAM_13555
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
       0.773
RAM_35290
COG3795 Uncharacterized protein conserved in bacteria.
 
     0.766
RAM_47100
COG3795 Uncharacterized protein conserved in bacteria.
 
     0.766
RAM_23925
COG3795 Uncharacterized protein conserved in bacteria.
 
     0.765
RAM_38280
COG3795 Uncharacterized protein conserved in bacteria.
 
     0.764
RAM_29040
COG3795 Uncharacterized protein conserved in bacteria.
 
     0.758
RAM_45640
COG3795 Uncharacterized protein conserved in bacteria.
 
     0.756
RAM_28655
COG3795 Uncharacterized protein conserved in bacteria.
 
     0.755
RAM_29175
COG3795 Uncharacterized protein conserved in bacteria.
 
     0.751
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.