STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13565Peptidase/hydrolase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (515 aa)    
Predicted Functional Partners:
RAM_13585
Hypothetical protein.
 
     0.609
ligC
COG1793 ATP-dependent DNA ligase.
       0.588
RAM_10660
Hypothetical protein.
  
     0.549
RAM_13580
Hypothetical protein.
       0.548
RAM_13590
Hypothetical protein.
       0.534
RAM_13575
Hypothetical protein.
       0.532
RAM_32525
Hypothetical protein.
  
     0.484
RAM_45330
COG0477 Permeases of the major facilitator superfamily.
  
     0.480
RAM_00655
Hypothetical protein.
  
     0.473
RAM_41060
Lipoprotein.
  
     0.469
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.