STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13585Hypothetical protein. (114 aa)    
Predicted Functional Partners:
RAM_13590
Hypothetical protein.
 
     0.961
RAM_13575
Hypothetical protein.
 
     0.954
RAM_13580
Hypothetical protein.
       0.851
ligC
COG1793 ATP-dependent DNA ligase.
       0.713
RAM_13595
COG1302 Uncharacterized protein conserved in bacteria.
 
     0.675
RAM_43210
Hypothetical protein.
 
     0.668
RAM_01325
LuxR family transcriptional regulator fused with ATPase domain; COG3899 Predicted ATPase.
  
     0.625
RAM_11670
Hypothetical protein.
  
     0.623
RAM_34695
COG4331 Predicted membrane protein.
  
     0.619
RAM_38630
MerR family transcriptional regulator.
  
     0.612
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.