STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13660Dipeptidyl-peptidase 4; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases. (699 aa)    
Predicted Functional Partners:
RAM_13665
Luciferase family protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
       0.775
RAM_13655
Hypothetical protein.
       0.714
RAM_13645
COG0640 Predicted transcriptional regulators.
  
    0.667
RAM_13650
Hypothetical protein; COG0469 Pyruvate kinase.
       0.664
RAM_46355
Hypothetical protein; COG1396 Predicted transcriptional regulators.
  
     0.511
RocD
Ornithine--oxo-acid transaminase; COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 0.489
RAM_12210
Prolyl oligopeptidase; COG1505 Serine proteases of the peptidase family S9A.
  
  
 0.473
rsmG
Glucose inhibited division protein B; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
     
 0.440
RAM_39480
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
    0.405
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.