STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13665Luciferase family protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases. (316 aa)    
Predicted Functional Partners:
RAM_13660
Dipeptidyl-peptidase 4; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
       0.776
RAM_13655
Hypothetical protein.
       0.712
RAM_13645
COG0640 Predicted transcriptional regulators.
       0.664
RAM_13650
Hypothetical protein; COG0469 Pyruvate kinase.
       0.664
RAM_35585
Hypothetical protein; COG0041 Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase.
  
   
 0.505
RocD
Ornithine--oxo-acid transaminase; COG4992 Ornithine/acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.460
RAM_30420
Hypothetical protein.
 
    0.444
CofD
LPPG:FO 2-phospho-L-lactate transferase.
 
   
 0.441
SsuD-2
Monooxygenase; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
  
     0.436
RAM_42925
Hypothetical protein.
  
   
 0.435
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.