STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
IucCIucA/IucC family protein; COG4264 Siderophore synthetase component. (576 aa)    
Predicted Functional Partners:
IucD
COG3486 Lysine/ornithine N-monooxygenase.
 
  
 0.981
RAM_13685
Amino acid decarboxylase; COG0076 Glutamate decarboxylase and related PLP-dependent proteins.
 
  
 0.948
GlnA4-2
Glutamine synthetase-like protein; COG0174 Glutamine synthetase.
       0.788
RAM_25655
COG3486 Lysine/ornithine N-monooxygenase.
 
  
 0.748
RAM_25620
ABC transporter substrate-binding protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
  
  
 0.546
RAM_13675
Hypothetical protein.
       0.529
crcB
CrcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.527
crcB-2
CrcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.527
RAM_06680
COG2375 Siderophore-interacting protein.
     
 0.447
TroR-2
COG1321 Mn-dependent transcriptional regulator.
      
 0.447
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.