STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13710SARP family transcriptional regulator fused with ATPase domain; COG3629 DNA-binding transcriptional activator of the SARP family. (997 aa)    
Predicted Functional Partners:
RAM_13705
Oxidoreductase; COG0277 FAD/FMN-containing dehydrogenases.
 
     0.656
UdhA
Soluble pyridine nucleotide transhydrogenase; COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
  
    0.564
RAM_18165
Hypothetical protein.
  
     0.534
RAM_13720
Hypothetical protein.
       0.518
RAM_35805
LuxR family transcriptional regulator fused with ATPase domain; COG3903 Predicted ATPase.
 
  
 0.481
RAM_27795
COG1396 Predicted transcriptional regulators.
 
    0.461
RAM_18160
Hypothetical protein; COG2319 FOG: WD40 repeat.
  
     0.437
RAM_24310
SARP family transcriptional regulator fused with ATPase domain; COG3903 Predicted ATPase.
 
  
 0.410
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.