STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13790Hypothetical protein. (101 aa)    
Predicted Functional Partners:
RAM_13785
Hypothetical protein.
 
     0.960
RAM_03630
Hypothetical protein.
  
     0.716
RAM_34985
Hypothetical protein; COG1512 Beta-propeller domains of methanol dehydrogenase type.
  
     0.702
RAM_32525
Hypothetical protein.
  
     0.700
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
       0.691
RAM_47480
Isoniazid inducible gene protein IniC; COG0699 Predicted GTPases (dynamin-related).
  
     0.670
RAM_03635
Hypothetical protein.
  
     0.660
RAM_13030
Hypothetical protein.
  
     0.649
RAM_45155
Hypothetical protein.
  
     0.649
RAM_06030
Hypothetical protein.
  
     0.633
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.