STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13830Hypothetical protein; COG1073 Hydrolases of the alpha/beta superfamily. (421 aa)    
Predicted Functional Partners:
RAM_13835
Hypothetical protein; COG0640 Predicted transcriptional regulators.
 
     0.837
RAM_13825
Hypothetical protein.
       0.528
SerA-3
COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
  
    0.506
RAM_13820
COG1309 Transcriptional regulator.
       0.481
RAM_16950
Hypothetical protein.
  
     0.478
RAM_10910
COG1846 Transcriptional regulators.
  
     0.452
RAM_00100
NTPase-like protein probably invoved in signal transduction; COG5635 Predicted NTPase (NACHT family).
 
     0.440
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.