STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13835Hypothetical protein; COG0640 Predicted transcriptional regulators. (181 aa)    
Predicted Functional Partners:
RAM_13830
Hypothetical protein; COG1073 Hydrolases of the alpha/beta superfamily.
 
     0.837
SerA-3
COG0111 Phosphoglycerate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
       0.686
RAM_25070
COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
     0.559
RAM_23940
COG1309 Transcriptional regulator.
  
     0.520
RAM_41850
Methylamine utilization protein MauE.
 
   
 0.509
RAM_00105
Hypothetical protein; COG0346 Lactoylglutathione lyase and related lyases.
  
     0.493
RAM_10485
Beta-lactamase class B; COG0491 Zn-dependent hydrolases, including glyoxylases.
 
     0.472
RAM_36460
COG1733 Predicted transcriptional regulators.
  
    0.437
RAM_39905
Hypothetical protein; COG3631 Ketosteroid isomerase-related protein.
  
    0.434
RAM_08580
COG3631 Ketosteroid isomerase-related protein.
  
    0.424
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.