STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_13860COG2188 Transcriptional regulators. (262 aa)    
Predicted Functional Partners:
NagE
COG1263 Phosphotransferase system IIC components, glucose/maltose/N-acetylglucosamine-specific.
 
  
 0.846
RAM_13850
Phosphocarrier protein.
  
  
 0.674
NagE-3
PTS system, glucose/maltose/N-acetylglucosamine-specific IIA component; COG2190 Phosphotransferase system IIA components.
 
   
 0.633
NagE-2
PTS system, glucose/maltose/N-acetylglucosamine-specific IIB component; COG1264 Phosphotransferase system IIB components.
 
  
 0.623
RAM_01360
COG2186 Transcriptional regulators.
  
  
 0.551
NagA
COG1820 N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.547
RAM_46125
COG2188 Transcriptional regulators.
  
     0.524
RAM_10965
COG2186 Transcriptional regulators.
  
  
 0.511
RAM_10410
COG2186 Transcriptional regulators.
  
  
 0.495
RAM_13845
COG1680 Beta-lactamase class C and other penicillin binding proteins.
       0.487
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.