STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14040Hypothetical protein. (449 aa)    
Predicted Functional Partners:
RAM_39810
Hypothetical protein.
 
   0.767
RAM_31455
COG5126 Ca2+-binding protein (EF-Hand superfamily).
    
 
 0.693
AcuC
Acetoin utilization protein AcuC; COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
    
 
 0.689
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
    
   0.676
RAM_13390
UreA amidolyase; COG0439 Biotin carboxylase.
  
  
 0.613
RAM_21115
Hypothetical protein.
  
     0.595
RAM_15480
Hypothetical protein.
  
     0.584
RAM_24665
ATPase; COG0464 ATPases of the AAA+ class.
    
   0.537
RAM_43620
ATPase; COG0464 ATPases of the AAA+ class.
    
   0.537
RAM_43965
ATPase; COG0464 ATPases of the AAA+ class.
    
   0.537
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.