STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14115COG5640 Secreted trypsin-like serine protease. (240 aa)    
Predicted Functional Partners:
RAM_10435
COG5640 Secreted trypsin-like serine protease.
  
     0.745
RAM_13015
COG5640 Secreted trypsin-like serine protease.
  
     0.732
RAM_00290
Esterase; COG5640 Secreted trypsin-like serine protease.
  
     0.720
RAM_00295
Esterase; COG5640 Secreted trypsin-like serine protease.
  
     0.620
XthA-2
COG0708 Exonuclease III.
   
   0.603
RAM_33850
COG4826 Serine protease inhibitor; Belongs to the serpin family.
 
 
 0.513
RAM_21210
COG2866 Predicted carboxypeptidase.
  
 
 
 0.488
RAM_06730
Peptidase.
  
     0.480
RAM_47200
NHL repeat-containing protein; COG0526 Thiol-disulfide isomerase and thioredoxins.
  
 0.479
uvrC
Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
       0.457
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.