STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14155Hypothetical protein. (376 aa)    
Predicted Functional Partners:
RAM_02820
Exopolysaccharide biosynthesis protein.
  
 
 0.852
RAM_01210
COG1134 ABC-type polysaccharide/polyol phosphate transport system, ATPase component.
  
  
 0.710
RAM_31125
Peptidase.
  
     0.670
RAM_27605
COG0842 ABC-type multidrug transport system, permease component.
 
  
 0.627
RAM_00130
COG0842 ABC-type multidrug transport system, permease component.
  
  
 0.528
RAM_01215
COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
  
 0.528
RAM_20565
COG0842 ABC-type multidrug transport system, permease component.
  
  
 0.528
RAM_14160
Hypothetical protein.
       0.523
RAM_08330
PA domain-containing protein.
  
   
 0.514
RAM_18760
Amino acid adenylation domain-containing protein; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
     
 0.510
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.