STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14180Membrane protein. (485 aa)    
Predicted Functional Partners:
RAM_14185
Hypothetical protein.
 
     0.962
RAM_14190
Hypothetical protein.
 
     0.958
RAM_23650
Hypothetical protein.
  
     0.755
RAM_14175
Pyridoxamine 5'-phosphate oxidase; COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain.
 
     0.653
RAM_42395
Lysozyme M1 precursor; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
  
     0.637
RAM_14195
Hypothetical protein; COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases.
       0.631
RAM_05230
COG1309 Transcriptional regulator.
  
     0.627
RAM_44990
COG1396 Predicted transcriptional regulators.
  
     0.522
GreA
Nucleoside diphosphate kinase regulator; COG0782 Transcription elongation factor.
  
     0.508
RAM_01105
Hypothetical protein.
  
     0.501
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.