STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DesCstearoyl-CoA desaturase (delta-9 desaturase); COG1398 Fatty-acid desaturase. (305 aa)    
Predicted Functional Partners:
RAM_10610
COG3239 Fatty acid desaturase.
  
 0.914
RAM_10615
COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
     
 0.905
DesC-3
stearoyl/acyl-CoA desaturase (delta-9 desaturase); COG1398 Fatty-acid desaturase.
  
  
 
0.903
DesC-2
stearoyl-CoA desaturase (delta-9 desaturase); COG1398 Fatty-acid desaturase.
  
  
 
0.901
DesC-4
stearoyl-CoA desaturase (delta-9 desaturase); COG1398 Fatty-acid desaturase.
  
  
 
0.901
RAM_20980
Fatty acid desaturase.
     
  0.900
RAM_14350
COG1612 Uncharacterized protein required for cytochrome oxidase assembly.
       0.588
RifB
COG3321 Polyketide synthase modules and related proteins.
  
 
 0.470
RAM_23440
Type I polyketide synthase; COG2070 Dioxygenases related to 2-nitropropane dioxygenase.
  
 
 0.457
RAM_41175
Hypothetical protein; Belongs to the UPF0434 family.
  
     0.453
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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