STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14350COG1612 Uncharacterized protein required for cytochrome oxidase assembly. (321 aa)    
Predicted Functional Partners:
ctaB
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
 
 0.996
RAM_14360
COG0842 ABC-type multidrug transport system, permease component.
 
   
 0.909
RAM_05930
Hypothetical protein.
 
 
 0.901
RAM_14370
Hypothetical protein.
 
   
 0.816
QcrC
COG2010 Cytochrome c, mono- and diheme variants.
 
     0.769
QcrA
Ubiquinol-cytochrome C reductase iron-sulfur subunit; COG0723 Rieske Fe-S protein.
  
  
 0.766
RAM_33545
COG1290 Cytochrome b subunit of the bc complex.
 
   
 0.752
QcrA-2
Ubiquinol-cytochrome C reductase iron-sulfur subunit; COG0723 Rieske Fe-S protein.
  
  
 0.751
QcrB
COG1290 Cytochrome b subunit of the bc complex.
 
   
 0.740
CoxC
COG1845 Heme/copper-type cytochrome/quinol oxidase, subunit 3.
 
  
 0.727
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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