STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14365COG1131 ABC-type multidrug transport system, ATPase component. (308 aa)    
Predicted Functional Partners:
RAM_14360
COG0842 ABC-type multidrug transport system, permease component.
 
  
 0.944
RAM_14370
Hypothetical protein.
   
 
 0.796
RAM_15395
COG0842 ABC-type multidrug transport system, permease component.
 
  
 0.670
RAM_39170
COG0842 ABC-type multidrug transport system, permease component.
 
  
 0.597
mshC
cysteinyl-tRNA synthetase; Catalyzes the ATP-dependent condensation of GlcN-Ins and L- cysteine to form L-Cys-GlcN-Ins; Belongs to the class-I aminoacyl-tRNA synthetase family. MshC subfamily.
  
   
 0.586
RAM_14375
COG2345 Predicted transcriptional regulator.
       0.550
SufB
COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
       0.550
SufD
COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
       0.550
RAM_44745
COG0842 ABC-type multidrug transport system, permease component.
  
 0.542
RAM_14355
Hypothetical protein.
       0.535
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.