STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14375COG2345 Predicted transcriptional regulator. (283 aa)    
Predicted Functional Partners:
SufB
COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
  
  
 0.978
SufD
COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
  
  
 0.905
SufC
COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
  
    0.836
NifU
Nitrogen fixation protein NifU; COG0822 NifU homolog involved in Fe-S cluster formation.
  
  
 0.797
RAM_14595
COG1316 Transcriptional regulator.
  
    0.773
RAM_14360
COG0842 ABC-type multidrug transport system, permease component.
 
     0.712
RAM_14370
Hypothetical protein.
 
     0.708
RAM_14405
COG2151 Predicted metal-sulfur cluster biosynthetic enzyme.
       0.690
IciA
Chromosome replication initiation inhibitor protein; COG0583 Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
   
    0.675
RAM_10745
Hypothetical protein.
  
     0.668
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.