STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14405COG2151 Predicted metal-sulfur cluster biosynthetic enzyme. (133 aa)    
Predicted Functional Partners:
NifU
Nitrogen fixation protein NifU; COG0822 NifU homolog involved in Fe-S cluster formation.
 
  
 0.994
SufC
COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
  
 0.976
SufS
Cysteine desulfurase/selenocysteine lyase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
  
 0.956
SufB
COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
   
 0.942
SufD
COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
   
 0.931
RAM_14375
COG2345 Predicted transcriptional regulator.
     
 0.816
RAM_15090
COG0520 Selenocysteine lyase.
 
  
 0.600
PaaB
Phenylacetic acid degradation protein PaaB; COG3460 Uncharacterized enzyme of phenylacetate metabolism.
  
  
 0.590
RAM_22780
COG0520 Selenocysteine lyase.
 
  
 0.587
RAM_14360
COG0842 ABC-type multidrug transport system, permease component.
       0.576
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.