Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RAM_14430Metalloprotease. (174 aa)    
Predicted Functional Partners:
RAM_45130
Hypothetical protein.
  
     0.655
RAM_16085
ABC transporter substrate-binding protein.
  
     0.570
RAM_15340
Hypothetical protein.
  
     0.568
RAM_39810
Hypothetical protein.
  
 
 0.544
RAM_14435
COG4585 Signal transduction histidine kinase.
 
     0.526
UbiB
Ubiquinone biosynthesis protein UbiB; COG0661 Predicted unusual protein kinase.
  
   0.525
RAM_24470
SARP family transcriptional regulator; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
 
   0.506
RAM_31345
Tripeptidyl aminopeptidase.
  
     0.484
RAM_14040
Hypothetical protein.
  
 
 
 0.481
RAM_32415
Hypothetical protein; COG1396 Predicted transcriptional regulators.
  
     0.475
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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