STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14490COG1309 Transcriptional regulator. (209 aa)    
Predicted Functional Partners:
RAM_14485
COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase.
 
     0.810
RAM_44990
COG1396 Predicted transcriptional regulators.
  
     0.589
RAM_14190
Hypothetical protein.
  
     0.526
RAM_34995
Hypothetical protein.
  
 
   0.505
RAM_14185
Hypothetical protein.
  
     0.449
RAM_23650
Hypothetical protein.
  
    0.436
RAM_42395
Lysozyme M1 precursor; COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase).
  
     0.434
RAM_31540
Hypothetical protein.
  
     0.413
RAM_39845
Hypothetical protein.
  
     0.412
RAM_12765
Hypothetical protein; COG1545 Predicted nucleic-acid-binding protein containing a Zn-ribbon.
  
     0.409
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.