STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14515COG0640 Predicted transcriptional regulators. (115 aa)    
Predicted Functional Partners:
RAM_14520
Hypothetical protein.
    0.937
RAM_20875
COG0640 Predicted transcriptional regulators.
  
     0.764
RAM_23880
COG0640 Predicted transcriptional regulators.
  
     0.735
RAM_12690
Hypothetical protein.
 
    0.692
RAM_05890
COG0640 Predicted transcriptional regulators.
  
     0.640
RAM_24025
COG0640 Predicted transcriptional regulators.
  
     0.603
RAM_38985
COG0640 Predicted transcriptional regulators.
 
    0.591
RAM_14510
Hypothetical protein; COG2200 FOG: EAL domain.
     
 0.540
RAM_20870
Activator of HSP90 ATPase.
 
    0.528
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.