STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14525COG2815 Uncharacterized protein conserved in bacteria. (116 aa)    
Predicted Functional Partners:
RAM_10090
PA14 domain-containing protein; COG3209 Rhs family protein.
 
     0.586
RAM_24210
FkbH-like protein; COG3882 Predicted enzyme involved in methoxymalonyl-ACP biosynthesis.
  
     0.585
Dgt
dGTPase; COG0232 dGTP triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily.
       0.554
RAM_20710
COG0236 Acyl carrier protein.
  
     0.528
RAM_20700
FkbH-like protein; COG3882 Predicted enzyme involved in methoxymalonyl-ACP biosynthesis.
  
     0.516
RAM_00275
COG0631 Serine/threonine protein phosphatase.
  
 
 0.503
RAM_02125
Hypothetical protein.
  
 
 0.503
RAM_18985
COG0631 Serine/threonine protein phosphatase.
  
 
 0.503
RAM_34690
COG0631 Serine/threonine protein phosphatase.
  
 
 0.503
RAM_45875
COG0631 Serine/threonine protein phosphatase.
  
 
 0.503
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.