STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DgtdGTPase; COG0232 dGTP triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily. (520 aa)    
Predicted Functional Partners:
Dgt-2
dGTPase; COG0232 dGTP triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily.
  
  
 
0.924
surE
5'(3')-nucleotidase/polyphosphatase; COG0496 Predicted acid phosphatase.
    
 0.908
SurE
Stationary phase survival protein SurE; COG0496 Predicted acid phosphatase.
    
 0.908
PunA
COG0005 Purine nucleoside phosphorylase.
    
  0.902
ndk
Nucleoside-diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
   
 
  0.902
RAM_47130
COG0737 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases; Belongs to the 5'-nucleotidase family.
    
  0.901
Pyk
COG0469 Pyruvate kinase; Belongs to the pyruvate kinase family.
    
  0.900
RAM_47525
Hypothetical protein.
  
     0.611
RAM_45155
Hypothetical protein.
  
     0.602
RAM_43840
Hypothetical protein.
  
     0.597
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.