Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| RAM_14545 | rplC | RAM_14545 | RAM_03460 | ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.795 |
| RAM_14545 | rplD | RAM_14545 | RAM_03465 | ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.803 |
| RAM_14545 | rplO | RAM_14545 | RAM_03555 | ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.800 |
| RAM_14545 | rplU | RAM_14545 | RAM_34400 | ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.811 |
| RAM_14545 | rpmI | RAM_14545 | RAM_31045 | ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.799 |
| RAM_14545 | rpsE | RAM_14545 | RAM_03545 | ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.804 |
| RAM_14545 | rpsF | RAM_14545 | RAM_47670 | ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.779 |
| RAM_14545 | rpsI | RAM_14545 | RAM_03710 | ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.788 |
| RAM_14545 | rpsP | RAM_14545 | RAM_09930 | ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.798 |
| RAM_14545 | rpsT | RAM_14545 | RAM_34295 | ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.787 |
| rplC | RAM_14545 | RAM_03460 | RAM_14545 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | ABC transport system ATP-binding protein; COG0488 ATPase components of ABC transporters with duplicated ATPase domains. | 0.795 |
| rplC | rplD | RAM_03460 | RAM_03465 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.999 |
| rplC | rplO | RAM_03460 | RAM_03555 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
| rplC | rplU | RAM_03460 | RAM_34400 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.996 |
| rplC | rpmI | RAM_03460 | RAM_31045 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | COG0291 Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.994 |
| rplC | rpsE | RAM_03460 | RAM_03545 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
| rplC | rpsF | RAM_03460 | RAM_47670 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.999 |
| rplC | rpsI | RAM_03460 | RAM_03710 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. | 0.999 |
| rplC | rpsP | RAM_03460 | RAM_09930 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | COG0228 Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.996 |
| rplC | rpsT | RAM_03460 | RAM_34295 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.985 |
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