STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14580COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain. (242 aa)    
Predicted Functional Partners:
RAM_14585
Hypothetical protein; COG2267 Lysophospholipase.
       0.544
ManZ
Mannose/fructose-specific IIC/D component of PTS system; COG3715 Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC.
 
     0.513
RAM_45210
COG1737 Transcriptional regulators.
 
     0.510
RAM_14575
COG1680 Beta-lactamase class C and other penicillin binding proteins.
       0.500
RAM_25050
Phosphotriesterase-family protein; COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold.
 
     0.438
RAM_15935
Phosphotriesterase PHP; COG1735 Predicted metal-dependent hydrolase with the TIM-barrel fold.
 
     0.407
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.