STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14625MutT/NUDIX family protein; COG0494 NTP pyrophosphohydrolases including oxidative damage repair enzymes; Belongs to the Nudix hydrolase family. (152 aa)    
Predicted Functional Partners:
RAM_14620
Pyridoxamine 5'-phosphate oxidase.
       0.723
RAM_19820
Hypothetical protein.
  
     0.618
RAM_00295
Esterase; COG5640 Secreted trypsin-like serine protease.
  
     0.565
RAM_37885
Secreted esterase.
  
     0.550
RAM_35425
Hypothetical protein; COG1850 Ribulose 1,5-bisphosphate carboxylase, large subunit.
  
     0.481
RAM_11580
Hypothetical protein.
  
     0.468
RAM_00290
Esterase; COG5640 Secreted trypsin-like serine protease.
  
     0.448
RAM_16960
Esterase.
  
     0.426
RAM_29785
CRISPR-associated protein CSE2.
  
     0.416
RAM_17135
Hypothetical protein; COG0627 Predicted esterase.
 
     0.413
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.