STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14660Hypothetical protein. (263 aa)    
Predicted Functional Partners:
RAM_14665
Hypothetical protein.
 
     0.886
RAM_14685
COG1960 Acyl-CoA dehydrogenases.
 
     0.869
RAM_14695
COG1309 Transcriptional regulator.
 
     0.854
RAM_14675
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
     0.825
RAM_14680
acyl-CoA carboxylase alpha chain; COG0439 Biotin carboxylase.
 
     0.820
Acd-3
COG1960 Acyl-CoA dehydrogenases.
 
     0.809
RAM_14690
Short-chain dehydrogenase/reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.735
pup
Prokaryotic ubiquitin-like protein Pup; Protein modifier that is covalently attached to lysine residues of substrate proteins, thereby targeting them for proteasomal degradation. The tagging system is termed pupylation. Belongs to the prokaryotic ubiquitin-like protein family.
  
     0.498
RAM_14655
Signal transduction protein containing NTPase domain.
       0.494
RAM_14700
Hypothetical protein.
       0.481
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.