STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14675COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta). (532 aa)    
Predicted Functional Partners:
RAM_14680
acyl-CoA carboxylase alpha chain; COG0439 Biotin carboxylase.
 0.967
RAM_13390
UreA amidolyase; COG0439 Biotin carboxylase.
  
 0.946
RAM_14665
Hypothetical protein.
 
  
 0.913
RAM_14685
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.890
RAM_40715
Acetyl-CoA/propionyl-CoA carboxylase, biotin carboxylase, biotin carboxyl carrier protein; COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
 0.887
Acd-3
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.866
RAM_14660
Hypothetical protein.
 
     0.822
RAM_14695
COG1309 Transcriptional regulator.
 
   
 0.815
HmgL
hydroxymethylglutaryl-CoA lyase; COG0119 Isopropylmalate/homocitrate/citramalate synthases.
 
 
 0.768
HmgL-2
hydroxymethylglutaryl-CoA lyase; COG0119 Isopropylmalate/homocitrate/citramalate synthases.
 
 
 0.768
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.