STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14680acyl-CoA carboxylase alpha chain; COG0439 Biotin carboxylase. (649 aa)    
Predicted Functional Partners:
RAM_03800
acetyl/propionyl-CoA carboxylase, carboxyltransferase subunit; COG0777 Acetyl-CoA carboxylase beta subunit.
 
 
 0.984
RAM_14675
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 0.967
RAM_14665
Hypothetical protein.
 
  
 0.900
RAM_14685
COG1960 Acyl-CoA dehydrogenases.
 
 
 0.867
BirA
COG0340 Biotin-(acetyl-CoA carboxylase) ligase.
 
  
 0.845
RAM_14695
COG1309 Transcriptional regulator.
 
 
 
 0.830
RAM_14660
Hypothetical protein.
 
     0.818
FabF-2
3-oxoacyl-[acyl-carrier-protein] synthase II; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
  
 0.815
Acd-3
COG1960 Acyl-CoA dehydrogenases.
  
 
 0.813
RAM_43060
COG1984 Allophanate hydrolase subunit 2.
 
 
 0.807
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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