STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14680acyl-CoA carboxylase alpha chain; COG0439 Biotin carboxylase. (649 aa)    
Predicted Functional Partners:
RAM_03800
acetyl/propionyl-CoA carboxylase, carboxyltransferase subunit; COG0777 Acetyl-CoA carboxylase beta subunit.
 
 
 0.983
RAM_17130
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
 0.979
RAM_04820
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
 0.978
RAM_14675
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 0.975
FabF-7
3-oxoacyl-[acyl-carrier-protein] synthase II; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.955
FabF-6
3-oxoacyl-[acyl-carrier-protein] synthase II; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
 
 0.949
CitE-2
COG2301 Citrate lyase beta subunit; Belongs to the HpcH/HpaI aldolase family.
  
 
 0.918
RAM_41510
COG1960 Acyl-CoA dehydrogenases.
  
 0.917
Acs-2
COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
  
 0.916
Acs-3
COG0365 Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases.
  
 0.916
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.