STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14695COG1309 Transcriptional regulator. (200 aa)    
Predicted Functional Partners:
RAM_14665
Hypothetical protein.
 
     0.908
RAM_14685
COG1960 Acyl-CoA dehydrogenases.
 
     0.893
RAM_14660
Hypothetical protein.
 
     0.850
RAM_14680
acyl-CoA carboxylase alpha chain; COG0439 Biotin carboxylase.
 
 
 
 0.830
RAM_14675
COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).
 
   
 0.815
Acd-3
COG1960 Acyl-CoA dehydrogenases.
 
     0.793
RAM_14690
Short-chain dehydrogenase/reductase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.788
RAM_18075
Hypothetical protein.
 
     0.513
RAM_14700
Hypothetical protein.
       0.508
RAM_14655
Signal transduction protein containing NTPase domain.
       0.465
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.