STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RAM_14745Hypothetical protein. (363 aa)    
Predicted Functional Partners:
RAM_14750
COG1309 Transcriptional regulator.
       0.648
RAM_45050
Hypothetical protein; COG1674 DNA segregation ATPase FtsK/SpoIIIE and related proteins.
  
     0.551
RAM_29880
Hypothetical protein.
  
     0.527
RAM_06690
COG1309 Transcriptional regulator.
  
     0.520
RAM_07105
Hypothetical protein.
  
     0.470
RAM_19365
COG3293 Transposase and inactivated derivatives.
  
     0.457
RAM_23030
COG3293 Transposase and inactivated derivatives.
  
     0.457
RAM_29710
COG3293 Transposase and inactivated derivatives.
  
     0.457
fabH-3
3-oxoacyl-(acyl carrier protein) synthase III; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids; Belongs to the thiolase-like superfamily. FabH family.
       0.429
RAM_19370
IS4 family transposase; COG3293 Transposase and inactivated derivatives.
  
     0.417
Your Current Organism:
Amycolatopsis mediterranei
NCBI taxonomy Id: 713604
Other names: A. mediterranei S699, Amycolatopsis mediterranei S699, Amycolatopsis mediterranei str. S699, Amycolatopsis mediterranei strain S699
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.